3GPD

TWINNING IN CRYSTALS OF HUMAN SKELETAL MUSCLE D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE

Structural Biology Knowledgebase: 3GPD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Work: 0.330

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3GPD

Classification: OXIDOREDUCTASE (NAD(A)-ALDEHYDE(D))

Total Structure Weight: 73557.59

Macromolecule Entities
Molecule Chains Length Organism Details
D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE G, R 334 Homo sapiens EC#: 1.2.1.12 IUBMB
Gene Name(s): GAPDH Gene View GAPD CDABP0047 OK/SW-cl.12

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

G, R NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

G, R SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Observed:
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 132.40 α = 90.00
b = 97.90 β = 114.30
c = 81.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1983-06-20
  • Released Date: 1983-10-27
  • Deposition author(s): Watson, H.C., Campbell, J.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values