3GOA

Crystal structure of the Salmonella typhimurium FadA 3-ketoacyl-CoA thiolase

Structural Biology Knowledgebase: 3GOA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.142

Literature

Macromolecules
Sequence Display for 3GOA

Classification: TRANSFERASE

Total Structure Weight: 84151.12

Macromolecule Entities
Molecule Chains Length Organism Details
3-ketoacyl-CoA thiolase A, B 387 Salmonella enterica EC#: 2.3.1.16 IUBMB
Gene Name(s): fadA STM3982 STMD1.7
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 73.00 α = 90.00
b = 64.50 β = 104.50
c = 74.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-03-18
  • Released Date: 2009-03-31
  • Deposition author(s): Anderson, S.M., Skarina, T., Onopriyenko, O., Wawrzak, Z., Papazisi, L., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4