3GJ4

Crystal structure of human RanGDP-Nup153ZnF3 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 3GJ4

Classification: TRANSPORT PROTEIN

Total Structure Weight: 57596.49

Macromolecule Entities
Molecule Chains Length Organism Details
GTP-binding nuclear protein Ran A, C 221 Homo sapiens Mutation: F35S
Gene Name(s): RAN Gene View ARA24 OK/SW-cl.81
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Nuclear pore complex protein Nup153 B, D 33 Rattus norvegicus Fragment: Nup153 - Zinc finger module 3: UNP residues 790-817
Gene Name(s): Nup153
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

A, C GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

B, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, C MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.205
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 68.42 α = 90.00
b = 61.57 β = 110.01
c = 72.06 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-03-07
  • Released Date: 2009-08-04
  • Deposition author(s): Partridge, J.R., Schwartz, T.U.

Revision History

  • 2011-07-13
    Type: Version format compliance