3G2N

Crystal structure of N-acylglucosylamine with glycogen phosphorylase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.197

Literature

Macromolecules
Sequence Display for 3G2N

Classification: TRANSFERASE

Total Structure Weight: 97802.59

Macromolecule Entities
Molecule Chains Length Organism Details
Glycogen phosphorylase, muscle form A 842 Oryctolagus cuniculus EC#: 2.4.1.1 IUBMB
Gene Name(s): PYGM Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OAK
Query on OAK

A N-(phenylcarbonyl)-beta-D-glucopyranosylamine
C13 H17 N O6
SPYSOSUFGSNSMY-BZNQNGANSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
OAK Ki: 81000 - 144000 nM (97 - 100) BindingDB

N/A in BindingMoad
Ki: 81000 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
LLP
Query on LLP
A L-PEPTIDE LINKING C14 H22 N3 O7 P LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.197
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 128.64 α = 90.00
b = 128.64 β = 90.00
c = 116.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-01-31
  • Released Date: 2010-02-16
  • Deposition author(s): Chrysina, E.D., Bokor, E., Alexacou, K.-M., Charavgi, M.-D., Oikonomakos, G.N., Zographos, S.E., Leonidas, D.D., Oikonomakos, N.G., Somsak, L.

Revision History

  • Version 1_0: 2010-02-16

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance