3FMS

Crystal structure of TM0439, a GntR transcriptional regulator


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.157

Literature

Macromolecules
Sequence Display for 3FMS

Classification: TRANSCRIPTION REGULATOR

Total Structure Weight: 24690.48

Macromolecule Entities
Molecule Chains Length Organism Details
Transcriptional regulator, GntR family A 209 Thermotoga maritima Mutation: E118A, K119A, K122A
Gene Name(s): TM_0439 Tmari_0436
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

A NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.157
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 85.19 α = 90.00
b = 71.72 β = 104.59
c = 43.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-12-22
  • Released Date: 2009-02-10
  • Deposition author(s): Zheng, M., Cooper, D.R., Yu, M., Hung, L-W., Derewenda, U., Derewenda, Z.S., Integrated Center for Structure and Function Innovation (ISFI)
  • Previous versions: 3DBW

Revision History

  • 2011-07-13
    Type: Version format compliance
  • 2014-04-09
    Type: Source and taxonomy