3F9W

Structural Insights into Lysine Multiple Methylation by SET Domain Methyltransferases, SET8-Y334F / H4-Lys20 / AdoHcy


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.162

Literature

Macromolecules
Sequence Display for 3F9W

Classification: TRANSFERASE

Total Structure Weight: 81772.91

Macromolecule Entities
Molecule Chains Length Organism Details
Histone-lysine N-methyltransferase SETD8 A, B, C, D 166 Homo sapiens Fragment: SET domain: UNP residues 232-393
Mutation: Y334F
Gene Name(s): SETD8 KMT5A Gene View PRSET7 SET07 SET8
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Histone H4 E, F, G, H 10 Homo sapiens Fragment: UNP residues 16-25
Gene Name(s): HIST1H4A Gene View H4/A H4FA HIST1H4B Gene View H4/I H4FI HIST1H4C Gene View H4/G H4FG HIST1H4D Gene View H4/B H4FB HIST1H4E Gene View H4/J H4FJ HIST1H4F Gene View H4/C H4FC HIST1H4H Gene View H4/H H4FH HIST1H4I Gene View H4/M H4FM HIST1H4J Gene View H4/E H4FE HIST1H4K Gene View H4/D H4FD HIST1H4L Gene View H4/K H4FK HIST2H4A Gene View H4/N H4F2 H4FN HIST2H4 HIST2H4B Gene View H4/O H4FO HIST4H4 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SAH
Query on SAH

A, B, C, D S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.162
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 44.00 α = 89.20
b = 45.60 β = 87.10
c = 94.20 γ = 90.80

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-11-14
  • Released Date: 2008-11-25
  • Deposition author(s): Couture, J-F., Dirk, L.M.A., Brunzelle, J.S., Houtz, R.L., Trievel, R.C.

Revision History

  • Version 1_0: 2008-11-25

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance