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Crystal structure of Y2 I-AniI variant (F13Y/S111Y)/DNA complex with calcium
 
 
DOI:10.2210/pdb3eh8/pdb   NDB ID: PD1186
3EH8
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 146277.80
     
    Molecule:Intron-encoded DNA endonuclease I-AniI
    Polymer:1Type:polypeptide(L)Length:254
    Chains:A, D, G
    EC#:3.1.-.- Go to IUBMB EC entry  
    Fragment:Y2 I-AniI (UNP residues 237-488)
    Mutation:F13Y, F80K, S111Y, L232K
    Molecule:31-MER
    Polymer:2Type:polydeoxyribonucleotideLength:31
    Chains:B, E, H
    Other Details:the physiological DNA target site of I-AniI in the mitochondrial apocytochrome B gene of A. nidulans
    Molecule:31-MER
    Polymer:3Type:polydeoxyribonucleotideLength:31
    Chains:C, F, I
    Other Details:the physiological DNA target site of I-AniI in the mitochondrial apocytochrome B gene of A. nidulans
     
     
  •  
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    Polymer: 1
    Scientific Name: Emericella nidulans Go to NCBI Taxonomy entry Common Name: Aspergillus nidulans Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
    Polymer: 3
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    CA     CALCIUM ION Ca 3DLigand Explorer Link out to Ligand Expos:CA Link out to SuperLigands:CA Link out to SuperHapten:CA
     
     
  •  
    Move Section Derived Data Hide
     
     
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< Biological Assembly 1    Help >
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Biological assembly 1 assigned by authors and generated by PISA (software)
 
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Takeuchi, R.,   Stoddard, B.L.

    Deposition:   2008-09-11
    Release:   2009-01-13
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 2.70
    R-Value: 0.201 (obs.)
    R-Free: 0.253
    Space Group: C 2 2 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 107.56 α = 90.00 
    b = 192.60 β = 90.00 
    c = 161.80 γ = 90.00