3EDN

Crystal structure of the Bacillus anthracis phenazine biosynthesis protein, PhzF family

Structural Biology Knowledgebase: 3EDN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 3EDN

Classification: BIOSYNTHETIC PROTEIN

Total Structure Weight: 69062.98

Macromolecule Entities
Molecule Chains Length Organism Details
Phenazine biosynthesis protein, PhzF family A, B 299 Bacillus anthracis Gene Name(s): yddE GBAA_3469 AB163_05585 AB164_21495 AB165_16405 AB166_08370 AB167_26265 AB168_15370 AB169_23640 AB170_14320 AB171_16635 AB893_16900 ADT20_10140 ADT21_19275 BASH2_02454 BF27_4190
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SIN
Query on SIN

A SUCCINIC ACID
C4 H6 O4
KDYFGRWQOYBRFD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 60.09 α = 90.00
b = 65.64 β = 90.00
c = 150.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-09-03
  • Released Date: 2008-10-07
  • Deposition author(s): Anderson, S.M., Brunzelle, J.S., Onopriyenko, O., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4