3E7N

Crystal structure of d-ribose high-affinity transport system from salmonella typhimurium lt2

Structural Biology Knowledgebase: 3E7N SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 3E7N

Classification: TRANSPORT PROTEIN

Total Structure Weight: 235772.09

Macromolecule Entities
Molecule Chains Length Organism Details
D-ribose high-affinity transport system A, B, C..., D, E, F, G, H, I, J, K, L, M, N, OA, B, C, D, E, F, G, H, I, J, K, L, M, N, O 142 Salmonella enterica Gene Name(s): rbsD STM3881
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, B, C, D, E, F, G, H, J, K, L, N, O 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 293.04 α = 90.00
b = 92.73 β = 106.53
c = 93.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-08-18
  • Released Date: 2008-08-26
  • Deposition author(s): Nocek, B., Maltseva, N., Gu, M., Joachimiak, A., Anderson, W., Center for Structural Genomics of Infectious Diseases (CSGID)
  • Previous versions: 3DSA

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor