Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with GW9662, 9-cis Retinoic Acid and NCOA2 Peptide
DOI:10.2210/pdb3e00/pdb   NDB ID: PD1165
3E00
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription/dna
    Structure Weight: 116042.15
    Molecule: Retinoic acid receptor RXR-alpha
    Polymer: 1 Type: protein Length: 467
    Chains: A
    Fragment: UNP residues 11-462
    Organism: Homo sapiens
    Gene Names: Gene View for RXRA NR2B1
    UniProtKB: Protein Feature View | Search PDB | P19793  
    Molecule: Peroxisome proliferator-activated receptor gamma
    Polymer: 2 Type: protein Length: 419
    Chains: D
    Fragment: UNP residues 102-505
    Organism: Homo sapiens
    Gene Names: Gene View for PPARG NR1C3
    UniProtKB: Protein Feature View | Search PDB | P37231  
    Molecule: DNA (5'-D(*DCP*DAP*DAP*DAP*DCP*DTP*DAP*DGP*DGP*DTP*DCP*DAP*DAP*DAP*DGP*DGP*DTP*DCP*DAP*DG)-3')
    Polymer: 3 Type: dna Length: 20
    Chains: C
    Molecule: DNA (5'-D(*DCP*DTP*DGP*DAP*DCP*DCP*DTP*DTP*DTP*DGP*DAP*DCP*DCP*DTP*DAP*DGP*DTP*DTP*DTP*DG)-3')
    Polymer: 4 Type: dna Length: 20
    Chains: F
    Molecule: NCOA2 Peptide
    Polymer: 5 Type: protein Length: 13
    Chains: E, G
    Details: LxxLL motif peptide
    Organism: Homo sapiens
    Gene Names: Gene View for NCOA2 BHLHE75 SRC2 TIF2
    UniProtKB: Protein Feature View | Search PDB | Q15596  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 4
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 5
    Scientific Name: Synthetic construct (Homo sapiens)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3DZU   Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with BVT.13, 9-cis Retinoic Acid and NCOA2 Peptide 
    3DZY   Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with Rosiglitazone, 9-cis Retinoic Acid and NCOA2 Peptide 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    GW9
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    GW9 C13 H9 Cl N2 O3
    2-chloro-5-nitro-N-phenylbenzamide
    REA
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    REA C20 H28 O2
    RETINOIC ACID
    REA:3E00
    ZN
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    ZN Zn
    ZINC ION
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    GW9
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    GW9
    IC50: 3300 nM (100) - data from BindingDB  
    N/Ain BindingMoad
    N/Ain PDBbind
    REA
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    REA
    EC50: >0.001 - 6 nM (100) - data from BindingDB  
    IC50: 29 - 50000 nM (97 - 100) - data from BindingDB  
    Kd: >0.001 - 9 nM (100) - data from BindingDB  
    Ki: 0.4 - 350 nM (100) - data from BindingDB  
    N/Ain BindingMoad
    N/Ain PDBbind
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:PD1165
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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