3DMZ

Hexafluorobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.178

Literature

Macromolecules
Sequence Display for 3DMZ

Classification: HYDROLASE

Total Structure Weight: 19306.23

Macromolecule Entities
Molecule Chains Length Organism Details
Lysozyme A 164 Escherichia virus t4 EC#: 3.2.1.17 IUBMB
Mutation: C54T, C97A, L99A
Gene Name(s): E
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HFB
Query on HFB

A hexafluorobenzene
C6 F6
ZQBFAOFFOQMSGJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HED
Query on HED

A 2-HYDROXYETHYL DISULFIDE
C4 H10 O2 S2
KYNFOMQIXZUKRK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.178
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 59.95 α = 90.00
b = 59.95 β = 90.00
c = 95.49 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-07-01
  • Released Date: 2008-11-11
  • Deposition author(s): Liu, L., Matthews, B.W.

Revision History

  • Version 1_0: 2008-11-11

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance