3DIG

CRYSTAL STRUCTURE OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH BOUND TO S-(2-aminoethyl)-L-cysteine

  • Classification: RNA
  • Deposited: 2008-06-20 Released: 2008-09-16
  • Deposition author(s): Serganov, A.A.

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.197

Literature

Macromolecules
Sequence Display for 3DIG

Classification: RNA

Total Structure Weight: 57220.88

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (174-MER) X 174 synthetic

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SLZ
Query on SLZ

X L-THIALYSINE
C5 H12 N2 O2 S
GHSJKUNUIHUPDF-BYPYZUCNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IPA
Query on IPA

X ISOPROPYL ALCOHOL
2-PROPANOL (Synonym)
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

X POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

X SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CCC
Query on CCC
X RNA LINKING C9 H13 N3 O10 P2 C

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.197
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 54.44 α = 90.00
b = 78.94 β = 90.00
c = 142.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-06-20
  • Released Date: 2008-09-16
  • Deposition author(s): Serganov, A.A.

Revision History

  • Version 1_0: 2008-09-16

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance