Structures of Leishmania naiffi uracil-DNA glycosylase in complex with several ligands identified with fragment cocktail crystallography.
Larson, E.T., Merritt, E.A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Uracil-DNA glycosylase | 268 | Leishmania naiffi | Mutation(s): 0  Gene Names: similar to LbrM18_V2.0540 EC: 3.2.2 | ||
UniProt | |||||
Find proteins for D0VWU0 (Leishmania naiffi) Explore D0VWU0  Go to UniProtKB:  D0VWU0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | D0VWU0 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
URB Query on URB | C [auth A] | 5-bromopyrimidine-2,4(1H,3H)-dione C4 H3 Br N2 O2 LQLQRFGHAALLLE-UHFFFAOYSA-N | |||
URA Query on URA | D [auth A] | URACIL C4 H4 N2 O2 ISAKRJDGNUQOIC-UHFFFAOYSA-N | |||
GOL Query on GOL | E [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
BR Query on BR | B [auth A] | BROMIDE ION Br CPELXLSAUQHCOX-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 75.32 | α = 90 |
b = 75.32 | β = 90 |
c = 105.703 | γ = 120 |
Software Name | Purpose |
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DENZO | data reduction |
SCALEPACK | data scaling |
MOLREP | phasing |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
Blu-Ice | data collection |
HKL-2000 | data reduction |
HKL-2000 | data scaling |