3CWC

Crystal structure of putative glycerate kinase 2 from Salmonella typhimurium LT2

Structural Biology Knowledgebase: 3CWC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.23 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 3CWC

Classification: TRANSFERASE

Total Structure Weight: 80465.05

Macromolecule Entities
Molecule Chains Length Organism Details
Putative glycerate kinase 2 A, B 383 Salmonella enterica Gene Name(s): STM2959
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 63.73 α = 90.00
b = 59.55 β = 106.01
c = 103.61 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-04-21
  • Released Date: 2008-07-08
  • Deposition author(s): Osipiuk, J., Zhou, M., Holzle, D., Anderson, W., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

  • 2014-04-02
    Type: Source and taxonomy | Details: update SOURCE information
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor