3CQV

Crystal structure of Reverb beta in complex with heme

Structural Biology Knowledgebase: 3CQV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.197

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3CQV

Classification: TRANSCRIPTION

Total Structure Weight: 23486.72

Macromolecule Entities
Molecule Chains Length Organism Details
Nuclear receptor subfamily 1 group D member 2 A 199 Homo sapiens Fragment: UNP residues 381-579, see remarks 200 and 999
Gene Name(s): NR1D2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.197
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 73.43 α = 90.00
b = 48.62 β = 90.00
c = 68.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-04-03
  • Released Date: 2008-08-05
  • Deposition author(s): Xu, X., Dong, A., Pardee, K.I., Reinking, J., Krause, H., Schuetz, A., Zhang, R., Cui, H., Edwards, A., Arrowsmith, C.H., Weigelt, J., Bountra, C., Savchenko, A., Botchkarev, A., Structural Genomics Consortium (SGC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4