3CDO

Bacteriophage T4 lysozyme mutant R96V in wildtype background at low temperature

Structural Biology Knowledgebase: 3CDO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.87 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.187

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3CDO

Classification: HYDROLASE

Total Structure Weight: 75939.75

Macromolecule Entities
Molecule Chains Length Organism Details
Lysozyme A, B, C, D 164 Enterobacteria phage t4 sensu lato EC#: 3.2.1.17 IUBMB
Mutation: R96V
Gene Name(s): E

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEZ
Query on HEZ

A, C, D HEXANE-1,6-DIOL
C6 H14 O2
XXMIOPMDWAUFGU-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
MPD
Query on MPD

A, D (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.87 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.187
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 57.82 α = 90.00
b = 99.32 β = 90.00
c = 123.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-02-27
  • Released Date: 2009-02-17
  • Deposition author(s): Mooers, B.H.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4