3CBP

Set7/9-ER-Sinefungin complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.42 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.239

Literature

Macromolecules
Sequence Display for 3CBP

Classification: TRANSFERASE / TRANSFERASE RECEPTOR

Total Structure Weight: 30420.06

Macromolecule Entities
Molecule Chains Length Organism Details
Histone-lysine N-methyltransferase SETD7 A 256 Homo sapiens EC#: 2.1.1.43 IUBMB
Fragment: UNP residues 111-366
Gene Name(s): SETD7 Gene View KIAA1717 KMT7 SET7 SET9
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Estrogen receptor B 10 Homo sapiens Fragment: UNP residues 298-307
Gene Name(s): ESR1 Gene View ESR NR3A1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SFG
Query on SFG

A SINEFUNGIN
ADENOSYL-ORNITHINE (Synonym)
C15 H23 N7 O5
LMXOHSDXUQEUSF-YECHIGJVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BME
Query on BME

A BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
SFG N/A in BindingDB
N/A in BindingMoad
IC50: 2500 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.42 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.239
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 102.04 α = 90.00
b = 38.79 β = 90.00
c = 66.57 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-02-22
  • Released Date: 2008-05-13
  • Deposition author(s): Cheng, X., Jia, D.

Revision History

  • Version 1_0: 2008-05-13

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Non-polymer description, Version format compliance