3C7I

X-RAY crystal structure of the complex between the grb2-sh2 domain and a flexible ligand, FPTVN.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 3C7I

Classification: SPLICING

Total Structure Weight: 14262.97

Macromolecule Entities
Molecule Chains Length Organism Details
Growth factor receptor-bound protein 2 A 116 Homo sapiens Gene Name(s): GRB2 Gene View ASH
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TVN
Query on TVN

A N-{(2R)-4-(methylamino)-4-oxo-2-[4-(phosphonooxy)benzyl]butanoyl}- L-valyl-L-aspartamide
C21 H32 N5 O9 P
CCEFGGFBPGVHRR-XUWXXGDYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FMT
Query on FMT

A FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
TVN N/A in BindingDB
Ka: 440000 M-1  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.207
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 42.05 α = 90.00
b = 42.05 β = 90.00
c = 109.43 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-02-07
  • Released Date: 2008-08-12
  • Deposition author(s): Benfield, A.P., Martin, S.F.
  • Previous versions: 2HUY

Revision History

  • 2011-07-13
    Type: Version format compliance