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Crystal Structure of NotI Restriction Endonuclease Bound to Cognate DNA
 
 
DOI:10.2210/pdb3c25/pdb   NDB ID: PD1131
3C25
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 98730.35
     
    Molecule:DNA (5'-D(*DCP*DGP*DGP*DAP*DGP*DGP*DCP*DGP*DCP*DGP*DGP*DCP*DCP*DGP*DCP*DGP*DCP*DCP*DGP*DCP*DCP*DG)-3')
    Polymer:1Type:polydeoxyribonucleotideLength:22
    Chains:C
    Molecule:DNA (5'-D(*DCP*DGP*DGP*DCP*DGP*DGP*DCP*DGP*DCP*DGP*DGP*DCP*DCP*DGP*DCP*DGP*DCP*DCP*DTP*DCP*DCP*DG)-3')
    Polymer:2Type:polydeoxyribonucleotideLength:22
    Chains:D
    Molecule:NotI restriction endonuclease
    Polymer:3Type:polypeptide(L)Length:383
    Chains:A, B
     
     
  •  
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    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
    Polymer: 2
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
    Polymer: 3
    Scientific Name: Nocardia otitidiscaviarum Go to NCBI Taxonomy entry Expression System: Escherichia coli  
     
     
  •  
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    Id Details
    3BVQ  Crystal Structure of Apo NotI Restriction Endonuclease 
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    CA     CALCIUM ION Ca 3DLigand Explorer Link out to Ligand Expos:CA Link out to SuperLigands:CA Link out to SuperHapten:CA
    FE     FE (III) ION Fe 3DLigand Explorer Link out to Ligand Expos:FE Link out to SuperLigands:FE Link out to SuperHapten:FE
     
     
  •  
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Biological assembly assigned by authors and generated by PISA (software)
 
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Lambert, A.R.,   Sussman, D.,   Shen, B.,   Stoddard, B.L.

    Deposition:   2008-01-24
    Release:   2008-02-12
    Last Modified (REVDAT):   2009-02-24

    Previous versions: 3BVR
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 2.50
    R-Value: 0.226 (obs.)
    R-Free: 0.277
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 73.89 α = 90.00 
    b = 81.71 β = 99.51 
    c = 73.58 γ = 90.00