3C09

Crystal structure the Fab fragment of matuzumab (Fab72000) in complex with domain III of the extracellular region of EGFR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.299
  • R-Value Work: 0.242

Literature

Macromolecules
Sequence Display for 3C09

Classification: IMMUNE SYSTEM / TRANSFERASE

Total Structure Weight: 144883.61

Macromolecule Entities
Molecule Chains Length Organism Details
Matuzumab Fab Light chain B, L 212 Homo sapiens Mus musculus Details: Human/mouse chimeric derivative of mouse monoclonal antibody 425
Matuzumab Fab Heavy chain C, H 223 Homo sapiens Mus musculus Details: Human/mouse chimeric derivative of mouse monoclonal antibody 425
Epidermal growth factor receptor A, D 214 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: sEGFR domain III
Gene Name(s): EGFR Gene View ERBB ERBB1 HER1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, D N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A, D BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.299
  • R-Value Work: 0.242
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 141.07 α = 90.00
b = 205.04 β = 117.49
c = 81.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-01-18
  • Released Date: 2008-04-15
  • Deposition author(s): Ferguson, K.M., Schmiedel, J., Knoechel, T.

Revision History

  • 2011-07-13
    Type: Non-polymer description, Version format compliance