3BY6

Crystal structure of a transcriptional regulator from Oenococcus oeni

Structural Biology Knowledgebase: 3BY6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.239

Literature

Macromolecules
Sequence Display for 3BY6

Classification: TRANSCRIPTION REGULATOR

Total Structure Weight: 69285.30

Macromolecule Entities
Molecule Chains Length Organism Details
Predicted transcriptional regulator A, B, C, D, E 126 Oenococcus oeni Gene Name(s): OEOE_1803
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A, B, C CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.278
  • R-Value Work: 0.239
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 83.43 α = 90.00
b = 103.89 β = 102.85
c = 131.39 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-01-15
  • Released Date: 2008-02-19
  • Deposition author(s): Zhang, R., Volkart, L., Gu, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4