3BXH

Crystal structure of effector binding domain of central glycolytic gene regulator (CggR) from Bacillus subtilis in complex with fructose-6-phosphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.161

Literature

Macromolecules
Sequence Display for 3BXH

Classification: GENE REGULATION

Total Structure Weight: 55757.45

Macromolecule Entities
Molecule Chains Length Organism Details
Central glycolytic gene regulator A, B 255 Bacillus subtilis Fragment: Effector binding domain: Residues 89-340
Gene Name(s): cggR yvbQ BSU33950
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
F6P
Query on F6P

A, B FRUCTOSE-6-PHOSPHATE
C6 H13 O9 P
BGWGXPAPYGQALX-ARQDHWQXSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SCN
Query on SCN

A, B THIOCYANATE ION
C N S
ZMZDMBWJUHKJPS-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
F6P N/A in BindingDB
Kd: 94340 nM  BindingMOAD
Kd: 94340 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.161
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 55.46 α = 90.00
b = 83.68 β = 90.00
c = 113.75 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-01-13
  • Released Date: 2008-07-01
  • Deposition author(s): Rezacova, P., Otwinowski, Z.

Revision History

  • 2011-07-13
    Type: Advisory, Refinement description, Version format compliance