3BQP

Crystal Structure of Human Saposin D (orthorhombic)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Observed: 0.176

Literature

Macromolecules
Sequence Display for 3BQP

Classification: LIPID BINDING PROTEIN

Total Structure Weight: 17925.58

Macromolecule Entities
Molecule Chains Length Organism Details
Proactivator polypeptide A, B 80 Homo sapiens Fragment: SAPOSIN D, RESIDUES 405-484
Gene Name(s): PSAP Gene View GLBA SAP1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Observed: 0.176
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 40.45 α = 90.00
b = 61.45 β = 90.00
c = 64.57 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-12-20
  • Released Date: 2008-02-05
  • Deposition author(s): Prive, G.G., Popovic, K.

Revision History

  • Version 1_0: 2008-02-05

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance