3BL9

Synthetic Gene Encoded DcpS bound to inhibitor DG157493


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.174

Literature

Macromolecules
Sequence Display for 3BL9

Classification: HYDROLASE

Total Structure Weight: 70215.57

Macromolecule Entities
Molecule Chains Length Organism Details
Scavenger mRNA-decapping enzyme DcpS A, B 301 Homo sapiens EC#: 3.6.1.59 IUBMB
Fragment: UNP residues 38-337
Gene Name(s): DCPS Gene View DCS1 HINT5 HSPC015
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DD2
Query on DD2

A 5-{[1-(2,3-dichlorobenzyl)piperidin-4-yl]methoxy}quinazoline- 2,4-diamine
C21 H23 Cl2 N5 O
XVLUVRFYGVJKGJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DD2 EC50: 67 nM (99) BindingDB
IC50: 43.94 nM (99) BindingDB

IC50: 43.94 nM  BindingMOAD
IC50: 66 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.174
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 49.41 α = 62.35
b = 56.87 β = 77.93
c = 59.50 γ = 79.54

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-12-10
  • Released Date: 2008-10-21
  • Deposition author(s): Staker, B.L., Christensen, J., Stewart, L., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D)

Revision History

  • 2011-07-13
    Type: Version format compliance