3BAM

RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA AND MANGANESE IONS (POST-REACTIVE COMPLEX)

Structural Biology Knowledgebase: 3BAM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.226

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3BAM

Classification: HYDROLASE / DNA

Total Structure Weight: 56592.82


Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (RESTRICTION ENDONUCLEASE BAMHI) A, B 213 Bacillus amyloliquefaciens EC#: 3.1.21.4 IUBMB
Details: CRYSTAL GROWN IN THE PRESENCE OF MANGANESE IONS.
Gene Name(s): bamHIR
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*TP*AP*TP*GP*GP*AP*TP*CP*CP*AP*TP*A)-3') C 12 synthetic
DNA (5'-D(*TP*AP*TP*G)-3') D 4 synthetic
DNA (5'-D(P*GP*AP*TP*CP*CP*AP*TP*A)-3') E 8 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

A, D MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.226
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 106.40 α = 90.00
b = 79.60 β = 90.00
c = 67.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-08-19
  • Released Date: 1999-01-13
  • Deposition author(s): Viadiu, H., Aggarwal, A.K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4