3B72

Crystal structure of lysozyme folded in SDS and 2-methyl-2,4-pentanediol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Observed: 0.204

Literature

Macromolecules
Sequence Display for 3B72

Classification: HYDROLASE

Total Structure Weight: 16587.90

Macromolecule Entities
Molecule Chains Length Organism Details
Lysozyme C A 147 Gallus gallus EC#: 3.2.1.17 IUBMB
Gene Name(s): LYZ Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

A (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Observed: 0.204
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 77.90 α = 90.00
b = 77.90 β = 90.00
c = 37.53 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-10-30
  • Released Date: 2008-09-09
  • Deposition author(s): Michaux, C., Pouyez, J., Wouters, J., Prive, G.G.

Revision History

  • Version 1_0: 2008-09-09

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance