Crystal structure of domain III of the Cricket Paralysis Virus IRES RNA
DOI:10.2210/pdb3b31/pdb   NDB ID: UR0129
3B31
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA
    Structure Weight: 14721.51
    Molecule: RNA (29-MER)
    Polymer: 1 Type: rna Length: 29
    Chains: A
    Fragment: residues 6174-6202
    Mutation: U6178A, A6198U, A6199G
    Details: CrPV IGR IRES RNA
    Molecule: RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3')
    Polymer: 2 Type: rna Length: 14
    Chains: B
    Fragment: residues 6203-6216
    Details: CrPV IGR IRES RNA
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    IRI
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    IRI H18 Ir N6
    IRIDIUM HEXAMMINE ION
    IRI:3B31
    PO4
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    PO4 O4 P
    PHOSPHATE ION
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:UR0129
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Kieft, J.S.,  Costantino, D.A.,  Pfingsten, J.S.,  Rambo, R.P.

    Deposition:   2007-10-19
    Release:   2007-12-25
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.40
    R-Value: 0.239 (work)
    R-Free: 0.269
    Space Group: P 41 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 58.72 α = 90.00 
    b = 58.72 β = 90.00 
    c = 98.99 γ = 90.00