3B2V

Crystal structure of the extracellular region of the epidermal growth factor receptor in complex with the Fab fragment of IMC-11F8


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.367
  • R-Value Work: 0.282

Literature

Macromolecules
Sequence Display for 3B2V

Classification: IMMUNE SYSTEM / TRANSFERASE

Total Structure Weight: 117806.47

Macromolecule Entities
Molecule Chains Length Organism Details
IMC-11F8 FAB Light chain L 213 Homo sapiens
IMC-11F8 FAB Heavy chain H 223 Homo sapiens Gene Name(s): IGH@
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Epidermal growth factor receptor A 624 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: Extracellular domain
Gene Name(s): EGFR Gene View ERBB ERBB1 HER1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDG
Query on NDG

A 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.367
  • R-Value Work: 0.282
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 68.74 α = 90.00
b = 266.24 β = 90.00
c = 156.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-10-19
  • Released Date: 2008-02-19
  • Deposition author(s): Ferguson, K.M., Li, S., Kussie, P.

Revision History

  • Version 1_0: 2008-02-19

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Non-polymer description, Version format compliance

  • Version 1_2: 2017-10-25

    Type: Advisory, Refinement description