3APF

Crystal structure of human PI3K-gamma in complex with CH5039699


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.82 Å
  • R-Value Free: 0.315
  • R-Value Work: 0.241

Literature

Macromolecules
Sequence Display for 3APF

Classification: Transferase / Transferase inhibitor

Total Structure Weight: 111054.39

Macromolecule Entities
Molecule Chains Length Organism Details
Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma isoform A 966 Homo sapiens EC#: 2.7.1.153 IUBMB
Fragment: residues 144-1102
Gene Name(s): PIK3CG Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BMW
Query on BMW

A 3-[7-(1H-benzimidazol-5-yl)-2-(morpholin- 4-yl)-6,7-dihydro-5H-pyrrolo[2,3-d]pyrimidin- 4-yl]phenol
C23 H22 N6 O2
NBBUAPYZXMAOGM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.82 Å
  • R-Value Free: 0.315
  • R-Value Work: 0.241
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 144.22 α = 90.00
b = 67.87 β = 95.38
c = 106.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-10-14
  • Released Date: 2011-04-13
  • Deposition author(s): Nakamura, M., Fukami, T.A., Miyazaki, T., Yoshida, M.

Revision History

  • Version 1_0: 2011-04-13

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance