3AKF

Crystal structure of exo-1,5-alpha-L-arabinofuranosidase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 3AKF

Classification: HYDROLASE

Total Structure Weight: 52179.97

Macromolecule Entities
Molecule Chains Length Organism Details
Putative secreted alpha L-arabinofuranosidase II A 468 Streptomyces avermitilis EC#: 3.2.1.55 IUBMB
Fragment: UNP RESIDUES 28-481
Gene Name(s): abfA SAV_1043
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.208
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 40.96 α = 90.00
b = 91.48 β = 90.00
c = 135.45 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-07-14
  • Released Date: 2010-08-25
  • Deposition author(s): Fujimoto, Z., Ichinose, H., Kaneko, S.

Revision History

  • 2011-07-13
    Type: Version format compliance