3AI4

Crystal structure of yeast enhanced green fluorescent protein - mouse polymerase iota ubiquitin binding motif fusion protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 3AI4

Classification: Fluorescent Protein replication

Total Structure Weight: 32186.99

Macromolecule Entities
Molecule Chains Length Organism Details
yeast enhanced green fluorescent protein,DNA polymerase iota A 285 Aequorea victoria Mus musculus EC#: 2.7.7.7 IUBMB
Fragment: recidues 1-230 for yeast enhanced green fluorescent protein,UBIQUITIN BINDING MOTIF FUSION PROTEIN for DNA polymerase iota
Gene Name(s): GFP Poli Rad30b
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CR2
Query on CR2
A L-PEPTIDE LINKING C13 H13 N3 O4 GLY , TYR , GLY

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.189
  • Space Group: P 42 21 2

Unit Cell:

Length (Å) Angle (°)
a = 87.46 α = 90.00
b = 87.46 β = 90.00
c = 83.61 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-05-10
  • Released Date: 2010-09-29
  • Deposition author(s): Suzuki, N., Wakatsuki, S., Kawasaki, M.

Revision History

  • 2011-07-13
    Type: Version format compliance
  • 2017-06-14
    Type: Database references, Source and taxonomy, Structure summary