393D

CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMER D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG)

• PDB DOI: https://doi.org/10.2210/pdb393D/pdb
• NAKB: 393D

• Classification: DNA/RNA
• Organism(s): synthetic construct
• Mutation(s): No 


• Deposited: 1998-04-29 Released: 1998-05-01 
• Deposition Author(s): Ban, C., Sundaralingam, M., Ramakrishnan, B.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Work: 0.181 

Literature

Crystal Structure of Two Self-Complementary Chimeric Decamer d(CCGG)r(C)d(GCCGG) and d(CCGG)r(CG)d(CCGG)

Ban, C., Ramakrishnan, B., Sundaralingam, M.

To be published.

Biological Assembly 1  

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 6.13 kDa 
• Atom Count: 476 
• Modelled Residue Count: 20 
• Deposited Residue Count: 20 
• Unique hybrid chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA/RNA (5'-D(*CP*CP*GP*GP)-R(*CP)-D(*GP*CP*CP*GP*G)-3')	A, B	10	synthetic construct

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Work: 0.181 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 24.52	α = 90
b = 44.85	β = 90
c = 47.58	γ = 90

Software Package:

Software Name	Purpose
XENGEN	data collection
XENGEN	data reduction
X-PLOR	refinement
XENGEN	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 1998-05-01 
Deposition Author(s): Ban, C., Sundaralingam, M., Ramakrishnan, B.

Revision History  

• Version 1.0: 1998-05-01
  Type: Initial release
  
• Version 1.1: 2008-05-22
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2016-12-14
  Changes: Structure summary
• Version 1.4: 2017-02-01
  Changes: Database references
• Version 1.5: 2017-05-03
  Changes: Source and taxonomy, Structure summary
• Version 1.6: 2024-02-21
  Changes: Data collection, Database references