376D

A ZIPPER-LIKE DNA DUPLEX D(GCGAAAGCT)

Structural Biology Knowledgebase: 376D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.189

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 376D

Classification: DNA

Total Structure Weight: 3004.87

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*(CBR)P*GP*AP*AP*AP*GP*CP*T)-3') A 9 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NCO
Query on NCO

A COBALT HEXAMMINE(III)
Co H18 N6
DYLMFCCYOUSRTK-FGTKAUEHAT
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CBR
Query on CBR
A DNA LINKING C9 H13 Br N3 O7 P DC

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.189
  • Space Group: P 63 2 2

Unit Cell:

Length (Å) Angle (°)
a = 37.56 α = 90.00
b = 37.56 β = 90.00
c = 65.39 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1998-01-22
  • Released Date: 1999-10-26
  • Deposition author(s): Cruse, W.B.T., Shepard, W., Prange, T., delalFortelle, E., Fourme, R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4