2ZU6

crystal structure of the eIF4A-PDCD4 complex

Structural Biology Knowledgebase: 2ZU6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.248

Literature

Macromolecules
Sequence Display for 2ZU6

Classification: HYDROLASE

Total Structure Weight: 246922.89

Macromolecule Entities
Molecule Chains Length Organism Details
Eukaryotic initiation factor 4A-I A, C, D, F 388 Homo sapiens EC#: 3.6.4.13 IUBMB
Fragment: UNP residues 20-406
Gene Name(s): EIF4A1 Gene View DDX2A EIF4A
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Programmed cell death protein 4 B, E 307 Homo sapiens Fragment: UNP residues 163-469
Gene Name(s): PDCD4 Gene View H731
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, D 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACY
Query on ACY

A, D ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
B, E L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.248
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 156.89 α = 90.00
b = 165.38 β = 90.00
c = 100.42 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-10-13
  • Released Date: 2009-02-24
  • Deposition author(s): Cho, Y., Chang, J.H., Sohn, S.Y.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4