2ZKX

Crystal structure of human Cu-Zn superoxide dismutase mutant G85R in space group I212121

Structural Biology Knowledgebase: 2ZKX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.72 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.176

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2ZKX

Classification: OXIDOREDUCTASE

Total Structure Weight: 66397.61

Macromolecule Entities
Molecule Chains Length Organism Details
Superoxide dismutase [Cu-Zn] A, B, C, D 159 Homo sapiens EC#: 1.15.1.1 IUBMB
Mutation: G85R
Gene Name(s): SOD1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CU1
Query on CU1

A, B, C, D COPPER (I) ION
Cu
VMQMZMRVKUZKQL-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.72 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.176
  • Space Group: I 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 73.11 α = 90.00
b = 113.08 β = 90.00
c = 146.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-03-31
  • Released Date: 2009-03-24
  • Deposition author(s): Yoshikawa, S., Kukimoto-Niino, M., Ito, K., Chen, L., Fu, Z.Q., Chrzas, J., Wang, B.C., Shirouzu, M., Urushitani, M., Takahashi, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
  • Previous versions: 2YQW

Revision History

  • 2012-04-04
    Type: Other | Details: add SPRSDE
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4