2ZJS

Crystal Structure of SecYE translocon from Thermus thermophilus with a Fab fragment

Structural Biology Knowledgebase: 2ZJS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.244

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2ZJS

Classification: PROTEIN TRANSPORT / IMMUNE SYSTEM

Total Structure Weight: 102364.86

Macromolecule Entities
Molecule Chains Length Organism Details
Preprotein translocase SecY subunit Y 434 Thermus thermophilus Fragment: residues 1-434
Mutation: L2V, R252G
Gene Name(s): secY TTHA1672
Preprotein translocase SecE subunit E 60 Thermus thermophilus Gene Name(s): secE TTHA0249
Fab56 (heavy chain) H 221 Mus musculus
Fab56 (light chain) L 214 Mus musculus

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: Sec and Translocase Proteins

Protein Name: SecYE translocon in complex with a Fab fragment


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

L, Y ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.244
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 189.10 α = 90.00
b = 103.07 β = 105.18
c = 78.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-03-08
  • Released Date: 2008-10-14
  • Deposition author(s): Tsukazaki, T., Mori, H., Fukai, S., Ishitani, R., Perederina, A., Vassylyev, D.G., Ito, K., Nureki, O.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4