2ZJC

TNFR1 selectve TNF mutant; R1-6

Structural Biology Knowledgebase: 2ZJC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.201

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2ZJC

Classification: Cytokine

Total Structure Weight: 51336.00

Macromolecule Entities
Molecule Chains Length Organism Details
Tumor necrosis factor A, B, C 157 Homo sapiens Fragment: R1-6, UNP residues 77-233
Mutation: K11M, L29K, R31A, R32G, K65S, K90P, K98R, K112N, K128P, E146S, S147T
Gene Name(s): TNF Gene View TNFA TNFSF2

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.201
  • Space Group: H 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 135.87 α = 90.00
b = 135.87 β = 90.00
c = 58.02 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-03-05
  • Released Date: 2009-01-20
  • Deposition author(s): Mukai, Y., Yamagata, Y., Tsutsumi, Y.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4