2ZDT

Crystal Structure of human JNK3 complexed with an isoquinolone inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.216

Literature

Macromolecules
Sequence Display for 2ZDT

Classification: TRANSFERASE

Total Structure Weight: 42597.66

Macromolecule Entities
Molecule Chains Length Organism Details
Mitogen-activated protein kinase 10 A 364 Homo sapiens EC#: 2.7.11.24 IUBMB
Fragment: Residues UNP 39-402
Gene Name(s): MAPK10 Gene View JNK3 JNK3A PRKM10 SAPK1B
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
46C
Query on 46C

A 4-[(6-chloro-1-oxo-4-phenyl-3-propanoylisoquinolin- 2(1H)-yl)methyl]benzoic acid
C26 H20 Cl N O4
ITAZALHTZBIKDO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
46C IC50: 9.6 - 2300 nM (92 - 93) BindingDB

N/A in BindingMoad
IC50: 9.6 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.216
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 50.33 α = 90.00
b = 71.69 β = 90.00
c = 108.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-11-27
  • Released Date: 2008-09-23
  • Deposition author(s): Sogabe, S., Asano, Y., Fukumoto, S., Habuka, N., Fujishima, A.

Revision History

  • 2011-07-13
    Type: Non-polymer description, Version format compliance