2Z5X

Crystal Structure of Human Monoamine Oxidase A with Harmine

Structural Biology Knowledgebase: 2Z5X SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.201

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2Z5X

Classification: Oxidoreductase

Total Structure Weight: 59969.12

Macromolecule Entities
Molecule Chains Length Organism Details
Amine oxidase [flavin-containing] A A 513 Homo sapiens EC#: 1.4.3.4 IUBMB
Fragment: RESIDUES 12-524
Gene Name(s): MAOA Gene View

Membrane Protein

Source: mpstruc | Group: MONOTOPIC MEMBRANE PROTEINS

Subgroup Name: Oxidases

Protein Name: Monoamine Oxidase A with bound Clorglycine


Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DCX
Query on DCX

A DECYL(DIMETHYL)PHOSPHINE OXIDE
DIMETHYLDECYLPHOSPHINE OXIDE (Synonym)
C12 H27 O P
GSVLCKASFMVUSW-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HRM
Query on HRM

A 7-METHOXY-1-METHYL-9H-BETA-CARBOLINE
HARMINE,,4-B]INDOL (Synonym)
C13 H12 N2 O
BXNJHAXVSOCGBA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
HRM Ki: 5 - 17 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.201
  • Space Group: C 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 135.26 α = 90.00
b = 218.71 β = 90.00
c = 54.37 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-07-20
  • Released Date: 2008-04-01
  • Deposition author(s): Son, S.Y., Ma, J., Yoshimura, M., Tsukihara, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update