Download MendeleySubstrate Recognition by Family 7 Alginagte Lyase from Sphingomonas sp. A1
Ogura, K., Yamasaki, M., Hashimoto, W., Mikami, B., Murata, K.To be published.
2Z42
Crystal Structure of Family 7 Alginate Lyase A1-II' from Sphingomonas sp. A1
- PDB DOI: https://doi.org/10.2210/pdb2Z42/pdb
- Classification: LYASE
- Organism(s): Sphingomonas sp.
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-06-12 Released: 2008-05-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.218
- R-Value Work: 0.177
- R-Value Observed: 0.179
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Alginate lyase | 237 | Sphingomonas sp. | Mutation(s): 0 Gene Names: aly EC: 4.2.2.3 |  | |
UniProt | |||||
Find proteins for Q75WP3 (Sphingomonas sp. A1) Explore Q75WP3 Go to UniProtKB: Q75WP3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q75WP3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A], C [auth A], D [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.218
- R-Value Work: 0.177
- R-Value Observed: 0.179
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 34.335 | α = 90 |
| b = 41.329 | β = 90 |
| c = 133.378 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2008-05-27 Deposition Author(s): Ogura, K., Yamasaki, M., Hashimoto, W., Mikami, B., Murata, K.
Revision History (Full details and data files)
- Version 1.0: 2008-05-27
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2016-12-21
Changes: Structure summary - Version 1.3: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
