2YCZ

TURKEY BETA1 ADRENERGIC RECEPTOR WITH STABILISING MUTATIONS AND BOUND ANTAGONIST IODOCYANOPINDOLOL


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.65 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.249

Literature

Macromolecules
Sequence Display for 2YCZ

Classification: RECEPTOR

Total Structure Weight: 72640.13

Macromolecule Entities
Molecule Chains Length Organism Details
BETA-1 ADRENERGIC RECEPTOR A, B 313 Meleagris gallopavo Fragment: RESIDUES 33-243,272-276,279-367
Mutation: R68S, M90V, C116L, Y227A, ΔC244, ΔE245, ΔG246, ΔR247, ΔF248, ΔY249, ΔG250, ΔS251, ΔQ252, ΔE253, ΔQ254, ΔP255, ΔQ256, ΔP257, ΔP258, ΔP259, ΔL260, ΔP261, ΔQ262, ΔH263, ΔQ264, ΔP265, ΔI266, ΔL267, ΔG268, ΔN269, ΔG270, ΔR271, ΔT277, ΔS278, A282L, F327A, F338M
Details: RESIDUES 3-32 AT THE N-TERMINUS AND RESIDUES 244-271 AND 277-278 OF THE THIRD INTRACELLULAR LOOP WERE DELETED FROM THE CONSTRUCT. THE CONSTRUCT WAS TRUNCATED AFTER RESIDUE 367 AND A HEXAHIS TAG ADDED.
Gene Name(s): ADRB1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: G Protein-Coupled Receptors (GPCRs)

Protein Name: β1 adrenergic receptor (engineered)


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
I32
Query on I32

A, B 4-{[(2S)-3-(tert-butylamino)-2-hydroxypropyl]oxy}- 3-iodo-1H-indole-2-carbonitrile
IODOCYANOPINDOLOL (Synonym)
C16 H20 I N3 O2
JBLUMBNIBNHRSO-JTQLQIEISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SOG
Query on SOG

B 2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO- PYRAN-3,4,5-TRIOL
1-S-OCTYL-BETA-D-THIOGLUCOSIDE (Synonym)
C14 H28 O5 S
CGVLVOOFCGWBCS-RGDJUOJXSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.65 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.249
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 177.85 α = 90.00
b = 56.30 β = 116.39
c = 110.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-03-17
  • Released Date: 2011-06-01
  • Deposition author(s): Moukhametzianov, R., Warne, T., Edwards, P.C., Serrano-Vega, M.J., Leslie, A.G.W., Tate, C.G., Schertler, G.F.X.

Revision History

  • Version 1_0: 2011-06-01

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance