2Y8N

Crystal structure of glycyl radical enzyme


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.184

Literature

Macromolecules
Sequence Display for 2Y8N

Classification: LYASE

Total Structure Weight: 221604.83

Macromolecule Entities
Molecule Chains Length Organism Details
4-HYDROXYPHENYLACETATE DECARBOXYLASE LARGE SUBUNIT A, C 897 Clostridium scatologenes EC#: 4.1.1.83 IUBMB
Gene Name(s): csdB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
4-HYDROXYPHENYLACETATE DECARBOXYLASE SMALL SUBUNIT B, D 86 Clostridium scatologenes EC#: 4.1.1.83 IUBMB
Fragment: NONE
Gene Name(s): csdC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SF4
Query on SF4

B, D IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.184
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 132.28 α = 90.00
b = 227.76 β = 90.00
c = 148.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-02-08
  • Released Date: 2011-09-21
  • Deposition author(s): Martins, B.M., Blaser, M., Feliks, M., Ullmann, G.M., Selmer, T.

Revision History

  • Version 1_0: 2011-09-21

    Type: Initial release

  • Version 1_1: 2011-10-19

    Type: Database references

  • Version 1_2: 2017-07-05

    Type: Data collection