2XOD

CRYSTAL STRUCTURE OF FLAVOPROTEIN NRDI FROM BACILLUS ANTHRACIS IN THE OXIDISED FORM

Structural Biology Knowledgebase: 2XOD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.96 Å
  • R-Value Observed: 0.124

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2XOD

Classification: FLAVOPROTEIN

Total Structure Weight: 14124.05

Macromolecule Entities
Molecule Chains Length Organism Details
NRDI PROTEIN A 119 Bacillus anthracis Gene Name(s): nrdI nrdIB GBAA_1369 AB163_09825 AB164_09670 AB165_23140 AB166_26050 AB167_11905 AB168_02420 AB169_19575 AB170_19215 AB171_21935 AB893_06955 ABW01_10715 ADK17_08310 ADK18_06735 ADT20_16730 ADT21_06700 BASH2_04491 BF27_607

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CAC
Query on CAC

A CACODYLATE ION
dimethylarsinate (Synonym)
C2 H6 As O2
OGGXGZAMXPVRFZ-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.96 Å
  • R-Value Observed: 0.124
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 42.54 α = 90.00
b = 45.55 β = 90.00
c = 56.13 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-08-14
  • Released Date: 2010-08-25
  • Deposition author(s): Johansson, R., Sprenger, J., Torrents, E., Sahlin, M., Sjoberg, B.M., Logan, D.T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4