2XE7

THE COMPLETE REACTION CYCLE OF HUMAN PHOSPHOGLYCERATE KINASE: THE OPEN TERNARY COMPLEX WITH 3PG AND ADP

Structural Biology Knowledgebase: 2XE7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.224

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2XE7

Classification: TRANSFERASE

Total Structure Weight: 45286.26

Macromolecule Entities
Molecule Chains Length Organism Details
PHOSPHOGLYCERATE KINASE 1 A 417 Homo sapiens EC#: 2.7.2.3 IUBMB
Gene Name(s): PGK1 Gene View PGKA MIG10 OK/SW-cl.110

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
3PG
Query on 3PG

A 3-PHOSPHOGLYCERIC ACID
C3 H7 O7 P
OSJPPGNTCRNQQC-UWTATZPHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.224
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 58.62 α = 90.00
b = 73.45 β = 90.00
c = 93.44 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-05-11
  • Released Date: 2011-01-19
  • Deposition author(s): Cliff, M.J., Baxter, N.J., Blackburn, G.M., Merli, A., Vas, M., Waltho, J.P., Bowler, M.W.

Revision History

  • 2011-10-26
    Type: Version format compliance | Details: REMARK 4
  • 2011-10-26
    Type: Citation | Details: JRNL