2WUU

Structure of N-myristoyltransferase from L. donovani


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.42 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.146

Literature

Macromolecules
Sequence Display for 2WUU

Classification: TRANSFERASE

Total Structure Weight: 49649.31

Macromolecule Entities
Molecule Chains Length Organism Details
N-MYRISTOYLTRANSFERASE A 421 Leishmania donovani EC#: 2.3.1.97 IUBMB
Gene Name(s): nmt
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NHW
Query on NHW

A 2-oxopentadecyl-CoA
C36 H64 N7 O17 P3 S
JKWHUJMJVNMKEF-UOCZADIYSA-J
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
NHW N/A in BindingDB
IC50: 68.7 nM  BindingMOAD
IC50: 68.7 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.42 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.146
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 45.97 α = 90.00
b = 90.13 β = 90.00
c = 92.36 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-10-09
  • Released Date: 2009-12-01
  • Deposition author(s): Brannigan, J.A., Smith, B.A., Yu, Z., Hodgkinson, M.R., Leatherbarrow, R.J., Tate, E.W., Brzozowski, A.M., Smith, D.F., Wilkinson, A.J.

Revision History

  • Version 1_0: 2009-12-01

    Type: Initial release

  • Version 1_1: 2012-07-18

    Type: Atomic model, Derived calculations, Non-polymer description, Refinement description, Version format compliance