2WTZ

MURE LIGASE OF MYCOBACTERIUM TUBERCULOSIS

Structural Biology Knowledgebase: 2WTZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.193

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2WTZ

Classification: LIGASE

Total Structure Weight: 225436.77

Macromolecule Entities
Molecule Chains Length Organism Details
UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE A, B, C, D 535 Mycobacterium tuberculosis EC#: 6.3.2.13 IUBMB
Gene Name(s): murE Rv2158c MTCY270.10

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UAG
Query on UAG

A, B, C, D URIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L- ALANINE-D-GLUTAMATE
C28 H43 N5 O23 P2
OJZCATPXPWFLHF-HPUCEMLMSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
KCX
Query on KCX
A, B, C, D L-PEPTIDE LINKING C7 H14 N2 O4 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.193
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 76.92 α = 111.09
b = 79.80 β = 92.16
c = 82.92 γ = 93.98

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-09-25
  • Released Date: 2009-12-15
  • Deposition author(s): Basavannacharya, C., Robertson, G., Munshi, T., Keep, N.H., Bhakta, S.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4