2WSS

THE STRUCTURE OF THE MEMBRANE EXTRINSIC REGION OF BOVINE ATP SYNTHASE

Structural Biology Knowledgebase: 2WSS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.217

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2WSS

Classification: HYDROLASE

Total Structure Weight: 851836.90

Macromolecule Entities
Molecule Chains Length Organism Details
ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL A, B, C..., J, K, LA, B, C, J, K, L 510 Bos taurus Mutation: S481G
Gene Name(s): ATP5A1 Gene View ATP5A2
ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL D, E, F..., M, N, OD, E, F, M, N, O 482 Bos taurus EC#: 3.6.3.14 IUBMB
Fragment: RESIDUES 47-528
Gene Name(s): ATP5B Gene View
ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL G, P 272 Bos taurus Fragment: HEART ISOFORM, RESIDUES 26-297
Gene Name(s): ATP5C1 Gene View ATP5C
ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL H, Q 146 Bos taurus Gene Name(s): ATP5D Gene View
ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL I, R 50 Bos taurus Gene Name(s): ATP5E Gene View
ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL S, W 190 Bos taurus Mutation: A129T
Gene Name(s): ATP5O Gene View
ATP SYNTHASE SUBUNIT B, MITOCHONDRIAL T, X 116 Bos taurus Fragment: RESIDUES 141-256
Gene Name(s): ATP5F1 Gene View ATP5F
ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL U 118 Bos taurus Fragment: RESIDUES 2-119
Gene Name(s): ATP5H Gene View
ATP SYNTHASE-COUPLING FACTOR 6, MITOCHONDRIAL V, Z 76 Bos taurus Gene Name(s): ATP5J Gene View

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: F-type ATPase

Protein Name: ATP synthase (F1c10)


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A, B, C, F, J, K, L, O PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ADP
Query on ADP

D, M ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, F, J, K, L, M, O MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
S, T, V, W, X, Z L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.217
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 158.24 α = 90.00
b = 231.24 β = 90.00
c = 286.36 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-09-09
  • Released Date: 2009-11-17
  • Deposition author(s): Rees, D.M., Leslie, A.G.W., Walker, J.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4