2WQG

SAP domain from Tho1: L31W (fluorophore) mutant


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 25 
  • Conformers Submitted: 25 
  • Selection Criteria: STRUCTURES REACHING ACCEPTANCE CRITERIA OF MINIMUM RESTRAINT VIOLATION 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Engineering a Two-Helix Bundle Protein for Folding Studies.

Dodson, C.A.Ferguson, N.Rutherford, T.J.Johnson, C.M.Fersht, A.R.

(2010) Protein Eng Des Sel 23: 357

  • DOI: https://doi.org/10.1093/protein/gzp080
  • Primary Citation of Related Structures:  
    2WQG

  • PubMed Abstract: 

    The SAP domain from the Saccharomyces cerevisiae THO1 protein contains a hydrophobic core and just two alpha-helices. It could provide a system for studying protein folding that bridges the gap between studies on isolated helices and those on larger protein domains. We have engineered the SAP domain for protein folding studies by inserting a tryptophan residue into the hydrophobic core (L31W) and solved its structure. The helical regions had a backbone root mean-squared deviation of 0.9 A from those of wild type. The mutation L31W destabilised wild type by 0.8 +/- 0.1 kcal mol(-1). The mutant folded in a reversible, apparent two-state manner with a microscopic folding rate constant of around 3700 s(-1) and is suitable for extended studies of folding.


  • Organizational Affiliation

    MRC Centre for Protein Engineering, Hills Road, Cambridge CB20QH, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
PROTEIN THO151Saccharomyces cerevisiaeMutation(s): 1 
UniProt
Find proteins for P40040 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P40040 
Go to UniProtKB:  P40040
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40040
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 25 
  • Conformers Submitted: 25 
  • Selection Criteria: STRUCTURES REACHING ACCEPTANCE CRITERIA OF MINIMUM RESTRAINT VIOLATION 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-02-16
    Type: Initial release
  • Version 1.1: 2011-05-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2018-01-24
    Changes: Source and taxonomy