2WP8

yeast rrp44 nuclease


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 2WP8

Classification: HYDROLASE

Total Structure Weight: 172970.72

Macromolecule Entities
Molecule Chains Length Organism Details
EXOSOME COMPLEX COMPONENT RRP45 A 305 Saccharomyces cerevisiae EC#: 3.1.13 IUBMB
Fragment: EXOSOME NON-CATALYTIC CORE COMPONENT RRP45, RIBOSOMAL RNA-PROCESSING PROTEIN 45
Gene Name(s): RRP45 YDR280W D9954.1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
EXOSOME COMPLEX COMPONENT SKI6 B 246 Saccharomyces cerevisiae EC#: 3.1.13 IUBMB
Mutation: T79N
Gene Name(s): SKI6 ECM20 RRP41 YGR195W G7587
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
EXOSOME COMPLEX EXONUCLEASE DIS3 J 977 Saccharomyces cerevisiae EC#: 3.1.13 IUBMB 3.1.26 IUBMB
Fragment: RESIDUES 25-1001
Mutation: D551N
Gene Name(s): DIS3 Gene View RRP44 YOL021C O2197
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

J GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.207
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 110.90 α = 90.00
b = 125.68 β = 90.00
c = 139.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-08-03
  • Released Date: 2009-11-10
  • Deposition author(s): Basquin, J., Bonneau, F., Ebert, J., Lorentzen, E., Conti, E.

Revision History

  • Version 1_0: 2009-11-10

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance

  • Version 1_2: 2012-05-30

    Type: Other