2W6V

STRUCTURE OF HUMAN DEOXY HEMOGLOBIN A IN COMPLEX WITH XENON

Structural Biology Knowledgebase: 2W6V SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.162

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2W6V

Classification: OXYGEN TRANSPORT

Total Structure Weight: 66902.17

Macromolecule Entities
Molecule Chains Length Organism Details
HEMOGLOBIN SUBUNIT ALPHA A, C 141 Homo sapiens Fragment: CHAIN ALPHA, RESIDUES 2-142
Gene Name(s): HBA1 Gene View HBA2 Gene View
HEMOGLOBIN SUBUNIT BETA B, D 146 Homo sapiens Fragment: CHAIN BETA, RESIDUES 2-147
Gene Name(s): HBB Gene View

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B, C, D PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
XE
Query on XE

A, B, C, D XENON
Xe
FHNFHKCVQCLJFQ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

C, D PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, C, D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.162
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.65 α = 90.00
b = 82.33 β = 99.79
c = 53.55 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-12-19
  • Released Date: 2009-04-28
  • Deposition author(s): Miele, A.E., Draghi, F., Sciara, G., Johnson, K.A., Renzi, F., Vallone, B., Brunori, M., Savino, C.

Revision History

  • 2011-08-17
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-08-17
    Type: Geometry validation | Details: REMARK 500
  • 2011-08-17
    Type: Refinement description | Details: REMARK 3
  • 2011-08-17
    Type: Non-polymer description | Details: HETSYN,FORMUL,HETNAM
  • 2011-08-17
    Type: Other | Details: REMARK 525,REMARK 900
  • 2011-08-17
    Type: Version format compliance | Details: REMARK 4
  • 2011-08-17
    Type: Citation | Details: JRNL